
The consortium of scientists and physicians at eight German sites is dedicated to fundamental questions of tumor heterogeneity with a particular focus on therapy-related changes. To this end, they are investigating the plasticity of tumors under selective pressure both temporally in the course of therapy and spatially with the help of analytical methods that take a high-resolution look at genomic, transcriptomic and proteomic mechanisms as well as the interaction with the tumor environment. In order to be able to study the heterogeneity and thus the differences in tumor cells with sufficient resolution, methods are primarily used that enable observation at the single cell level.
Focus on fusion-driven sarcomas
From a biological point of view, fusion-related sarcomas are particularly well suited for research into basic principles of tumor heterogeneity, as gene fusions are early, tumor-initiating events that are frequently used diagnostically due to their clonal and entity-defining character. On the one hand, this has the advantage that the presence of a specific gene fusion can be inferred during routine diagnostics. On the other hand, there is a characteristic genetic feature that is maintained throughout the development of these tumors and facilitates the investigation of divergent subclones and plasticity. Finally, fusion-related sarcomas are usually characterized by a comparatively low genetic complexity, which facilitates the differentiation between relevant and non-causative alterations and thus also the identification of events or patterns that promote tumor heterogeneity or represent a response to evolutionary pressure under therapy.

Recruitment for the project is based on two large precision oncology programs at the NCT sites in Dresden and Heidelberg, within the German Consortium for Translational Cancer Research (DKTK) and at the DKFZ: MASTER and INFORM, and their respective patient bases. These are (inter)national registry studies in which children (INFORM) and young adults (MASTER) with advanced cancers are examined molecularly and treated more effectively using a standardized procedure. Their aim is to find starting points for targeted therapies and to lay the foundation for controlled clinical trials in molecularly defined patient groups. In both programs, the clinical evaluation of molecular profiles and therapeutic decision-making by cross-institutional molecular tumor boards is already established. At the time of application, 2,000 and 3,500 patients were enrolled in INFORM and MASTER respectively. The proportion of cases with fusion-related sarcomas is around 30% in both programs, which illustrates the clinical challenge associated with these diseases.
Translation into clinical trials in close interaction with patient representatives
